BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008D03SP1|AL425846
(741 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 435 e-122
>3x_Contig1713
Length = 18539
Score = 435 bits (218), Expect = e-122
Identities = 228/232 (98%)
Strand = Plus / Plus
Query: 510 atggcgttcggttccactaaggatcgtatgttagtcatcgaagaatgtgccaactccaag 569
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12503 atggagttcggtaccactaaggatcgtatgttagtcatcgaagaatgtgccaactccaag 12562
Query: 570 actgtcacatgtttcctacgtgggtccmacagaatgattgtygatgaggctaaacgtgct 629
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 12563 actgtcacatgtttcctacgtgggtccaacagaatgattgtagatgaggctaaacgtgct 12622
Query: 630 ttacatgattccctatgtgtggtacgtaatttgatccgtgattctagagttgtgtacggt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12623 ttacatgattccctatgtgtggtacgtaatttgatccgtgattctagagttgtgtacggt 12682
Query: 690 ggtggtgccgcagaagtaacaatgtccttggctgtatcagatgaagctgaca 741
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12683 ggtggtgccgcagaagtaacaatgtccttggctgtatcagatgaagctgaca 12734
Score = 132 bits (66), Expect = 1e-30
Identities = 156/186 (83%)
Strand = Plus / Plus
Query: 7 cggttttgggttcgaaaagggggggcgttgatttcgatttgctcaacttcgacggscgtg 66
||||| ||| |||||| || ||| |||||||||||||||| |||| || || || ||||
Sbjct: 12000 cggttatggattcgaatagaagggacgttgatttcgatttgatcaaattagaaggacgtg 12059
Query: 67 ttggtgggtctttgacaggctctccgcttattcccggtgtcgttctaggtcgggstttct 126
||||||| ||||||| || |||| ||||||| ||||||||| ||| | || |||||
Sbjct: 12060 ttggtggatctttgaaagactctaagcttattaaaggtgtcgttatagataaggatttct 12119
Query: 127 ctcatcctcaaatgcccagbtctttagatggcgatttgaggttggctattctcacttgcc 186
|||||||||||||||||| || ||||| |||||||||| |||||||||||| |||||||
Sbjct: 12120 ctcatcctcaaatgcccaaatcattagaaggcgatttgaagttggctattctaacttgcc 12179
Query: 187 ccttcg 192
||||||
Sbjct: 12180 ccttcg 12185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2148
Number of Sequences: 1807
Number of extensions: 2148
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 741
length of database: 10,358,551
effective HSP length: 16
effective length of query: 725
effective length of database: 10,329,639
effective search space: 7488988275
effective search space used: 7488988275
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)